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12 docs tagged with "serotyping"

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ectyper

In silico prediction of Escherichia coli serotype.

hicap

Identify cap locus serotype and structure in Haemophilus influenzae assemblies.

hpsuissero

Serotype prediction of Haemophilus parasuis assemblies.

kleborate

Comprehensive screening of Klebsiella genomes for virulence and resistance determinants.

lissero

Serogroup typing prediction for Listeria monocytogenes.

meningotype

Comprehensive typing of Neisseria meningitidis.

seqsero2

Salmonella serotype prediction from sequencing reads or assemblies.

seroba

Serotyping of Streptococcus pneumoniae from Illumina paired-end reads.

shigapass

Prediction of Shigella serotypes and differentiation from EIEC.

shigatyper

Rapid determination of Shigella serotypes from sequencing reads.

shigeifinder

In silico serotype prediction for Shigella and Enteroinvasive E. coli (EIEC).

ssuissero

Serotype prediction of Streptococcus suis assemblies.