bactopia-bracken-to-excel
Write Bracken abundances to an Excel file.
Usage
bactopia-bracken-to-excel PREFIX BRACKEN_ABUNDANCES [OPTIONS]
Arguments
| Argument | Type | Required | Description |
|---|---|---|---|
PREFIX | STRING | Yes | Prefix to use for output files. |
BRACKEN_ABUNDANCES | STRING | Yes | The Bracken output with abundances. |
Options
| Option | Type | Default | Description |
|---|---|---|---|
--version, -V | BOOL | false | Show the version and exit. |
--limit | INT | 5 | Limit the result to the top N rows. |
--include_unclassified | BOOL | false | Include results for unclassified reads. |