bactopia-datasets
Download optional datasets to supplement your analyses with Bactopia
Usage
bactopia-datasets UNKNOWN [OPTIONS]
Arguments
| Argument | Type | Required | Description |
|---|---|---|---|
UNKNOWN | UNPROCESSED | No |
Required Options
| Option | Type | Default | Description |
|---|---|---|---|
--bactopia-path | STRING | Directory where Bactopia repository is stored |
Download Related Options
| Option | Type | Default | Description |
|---|---|---|---|
--datasets_cache | STRING | /home/rpetit3/.bactopia | Base directory to download datasets to (Defaults to env variable BACTOPIA_CACHEDIR, a subfolder called datasets will be created) |
--force | BOOL | false | Force overwrite of existing pre-built environments |
--max_retry | INT | 3 | Maximum times to attempt creating Conda environment. (Default: 3) |
Additional Options
| Option | Type | Default | Description |
|---|---|---|---|
--verbose | BOOL | false | Print debug related text |
--silent | BOOL | false | Only critical errors will be printed |
--version, -V | BOOL | false | Show the version and exit. |