bactopia-scrubber-summary

Create a before-and-after report from human read scrubbing.

Usage

bactopia-scrubber-summary SAMPLE ORIGINAL SCRUBBED [OPTIONS]

Arguments

Argument	Type	Required	Description
SAMPLE	STRING	Yes	Name of the input sample.
ORIGINAL	STRING	Yes	Original FASTQ stats in JSON format.
SCRUBBED	STRING	Yes	Scrubbed FASTQ stats in JSON format.

Options

Option	Type	Default	Description
--version, -V	BOOL	false	Show the version and exit.