bactopia-sysinfo

Auto-detect host RAM and CPUs, emit Nextflow CLI fragments for local profiles.

Reads the bactopia wrapper's argv as a passthrough. Emits to stdout the additional --max_memory <N>.GB / --max_cpus <N> flags that should be appended to the nextflow run command line. Emits nothing when:

• a custom config is supplied (-c or --nfconfig)
• any -profile value is not in the local-executor allow-list
• both --max_memory and --max_cpus are already set by the user
• the invocation is informational (--help, --help_all, --list_wfs)

Usage

bactopia-sysinfo ARGS [OPTIONS]

Arguments

Argument	Type	Required	Description
ARGS	UNPROCESSED	No

Options

Option	Type	Default	Description