bactopia-teton-prepare
Prepare sample sheets for downstream analysis in the Teton workflow.
Usage
bactopia-teton-prepare PREFIX SIZEMEUP RUN_TYPE FASTQS OUTDIR [OPTIONS]
Arguments
| Argument | Type | Required | Description |
|---|---|---|---|
PREFIX | STRING | Yes | Prefix to use for output files. |
SIZEMEUP | STRING | Yes | The SizeMeUp genome size estimate. |
RUN_TYPE | STRING | Yes | The input run type (e.g. paired-end, single-end, ont). |
FASTQS | STRING | Yes | Comma-separated list of FASTQ filenames. |
OUTDIR | STRING | Yes | The output directory for results. |
Options
| Option | Type | Default | Description |
|---|---|---|---|
--version, -V | BOOL | false | Show the version and exit. |