bactopia-update
Check if modules used by Bactopia Tools have newer versions available
Usage
bactopia-update UNKNOWN [OPTIONS]
Arguments
| Argument | Type | Required | Description |
|---|---|---|---|
UNKNOWN | UNPROCESSED | No |
Required Options
| Option | Type | Default | Description |
|---|---|---|---|
--bactopia-path | STRING | Directory where Bactopia repository is stored |
Module Options
| Option | Type | Default | Description |
|---|---|---|---|
--module | STRING | Only check a specific module for updates (e.g. 'fastp') | |
--max_retry | INT | 3 | Maximum times to attempt API queries. (Default: 3) |
Output Options
| Option | Type | Default | Description |
|---|---|---|---|
--json | BOOL | false | Output flat JSON |
--pretty | BOOL | false | Output pretty-printed JSON |
Additional Options
| Option | Type | Default | Description |
|---|---|---|---|
--verbose | BOOL | false | Print debug related text |
--silent | BOOL | false | Only critical errors will be printed |
--version, -V | BOOL | false | Show the version and exit. |