bactopia-workflows
Output the path to a Bactopia workflow main.nf file.
Usage
bactopia-workflows UNKNOWN [OPTIONS]
Arguments
| Argument | Type | Required | Description |
|---|---|---|---|
UNKNOWN | UNPROCESSED | No |
Required Options
| Option | Type | Default | Description |
|---|---|---|---|
--bactopia-path | STRING | Directory where Bactopia repository is stored |
Workflow Related Options
| Option | Type | Default | Description |
|---|---|---|---|
--wf | STRING | bactopia | Build a environment for a the given workflow |
--list_wfs | BOOL | false | List available Bactopia workflows and exit |
Additional Options
| Option | Type | Default | Description |
|---|---|---|---|
--verbose | BOOL | false | Print debug related text |
--silent | BOOL | false | Only critical errors will be printed |
--version, -V | BOOL | false | Show the version and exit. |