23 docs tagged with "alignment"

Search a nucleotide database using a nucleotide query.

Search a protein database using a protein query.

Search a protein database using a translated nucleotide query.

Search a translated nucleotide database using a protein query.

Search a translated nucleotide database using a translated nucleotide query.

Search a nucleotide database using nucleotide query sequences.

Search protein sequences against protein database.

Translate nucleotide sequences and search protein database.

Inference of recombination in bacterial genomes.

Identification, classification, and annotation of translated gene matches.

Detect recombination and construct a recombination-free phylogeny.

Build a pangenome from GFF3 annotations using Panaroo.

Perform pangenome analysis with optional core-genome phylogeny.

Build a pangenome from GFF3 annotations using PIRATE.

Rapid large-scale prokaryote pan genome analysis.

Build a pangenome from GFF3 annotations using Roary.

Core-SNP alignment from Snippy outputs.

Generate core-genome SNP alignment from per-sample Snippy outputs.

Rapid haploid variant calling and core genome alignment.

Create a SNP distance matrix from a multiple sequence alignment.

Calculate pairwise SNP distances from sequence alignments.

Search protein query sequences against nucleotide database.

Translate nucleotide query sequences and search nucleotide database.