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12 docs tagged with "amr"

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abritamr

Identify antimicrobial resistance genes using AMRFinderPlus.

amrfinderplus_run

Identify antimicrobial resistance and virulence genes in gene or protein sequences.

btyper3

In silico typing and characterization of *Bacillus cereus* group genomes.

kleborate

Genotyping and screening of *Klebsiella* genome assemblies.

mcroni

Detect sequence variations in the *mcr-1* colistin resistance gene.

mykrobe_predict

Predict Antimicrobial Resistance (AMR) for supported bacterial species.

pbptyper

Predict Penicillin Binding Protein (PBP) type of *Streptococcus pneumoniae* assemblies.

plasmidfinder

Identify plasmid replicon types in bacterial sequences and assemblies.

rgi_main

Predict antibiotic resistance from assemblies.