22 docs tagged with "antimicrobial-resistance"

Mass screening of contigs for antimicrobial and virulence genes.

Mass screening of contigs for antimicrobial and virulence genes.

Summarize Abricate screening results.

Identify antimicrobial resistance genes using AMRFinderPlus.

Detect antimicrobial resistance and virulence genes.

Find antimicrobial resistance genes and point mutations.

Identify antimicrobial resistance and virulence genes in gene or protein sequences.

Download and index the latest AMRFinder+ database.

Rapidly identify genes by creating local assemblies from paired-end reads.

Download and prepare reference databases for ARIBA analysis.

Identify genes by local assembly of reads.

Gene Allele Mutation Microbial Assessment.

Assign genotypes to Salmonella Typhi genomes.

Predict antibiotic resistance from sequence reads.

Predict penicillin binding protein (PBP) types of Streptococcus pneumoniae from genome assemblies.

Identify plasmid replicons in bacterial genome assemblies.

Predict antimicrobial resistance from protein or nucleotide data.

Create heatmaps of resistance gene presence/absence.

Predict antibiotic resistance from assemblies.

Identify SCCmec elements in Staphylococcus aureus genomes.

Identify SCCmec elements in Staphylococcus aureus genomes.

Identify SCCmec elements in Staphylococcus aureus genomes using Staphopia method.