18 docs tagged with "assembly"

Mass screening of contigs for antimicrobial and virulence genes.

Mass screening of contigs for antimicrobial and virulence genes.

Detect antimicrobial resistance and virulence genes.

Determine the agr locus type and operon variants in Staphylococcus aureus.

Identify Staphylococcus aureus agr locus type and operon variants.

Find antimicrobial resistance genes and point mutations.

Assemble bacterial genomes using short read, long read, or hybrid strategies.

Assemble bacterial genomes using automated assembler selection.

Rapid and standardized annotation of bacterial genomes and plasmids.

Assess genome assembly completeness using single-copy orthologs.

Assess genome assembly completeness using BUSCO.

Systematically search for anti-phage defense systems.

Reconstruct and type plasmids from a bacterial genome assembly.

Download assemblies and annotation files from NCBI's Assembly database.

Download bacterial genomes from NCBI's RefSeq database.

Quality Assessment Tool for Genome Assemblies.

Evaluate assembly quality using QUAST.

Predict antimicrobial resistance from protein or nucleotide data.