11 docs tagged with "core-genome"

Detect and filter recombination regions in bacterial alignments.

Build a pangenome from GFF3 annotations using Panaroo.

Fast and scalable bacterial pangenome analysis using a graph-based approach.

Perform pangenome analysis with optional core-genome phylogeny.

Pangenome Identification and Reconciliation Analysis Tool for Epidemiology (PIRATE).

Build a pangenome from GFF3 annotations using PIRATE.

Rapid large-scale prokaryote pan genome analysis.

Build a pangenome from GFF3 annotations using Roary.

Core-SNP alignment from Snippy outputs.

Generate core-genome SNP alignment from per-sample Snippy outputs.

Calculate pairwise SNP distances from sequence alignments.