18 docs tagged with "database"

Download and index the latest AMRFinder+ database.

Download and prepare reference databases for ARIBA analysis.

Download pre-compiled datasets required by Bactopia.

Download and provide pre-compiled datasets required by Bactopia.

Download the Bakta annotation database.

Search a nucleotide database using nucleotide query sequences.

Search protein sequences against protein database.

Translate nucleotide sequences and search protein database.

Download the pre-trained CheckM2 database.

Download and package the DefenseFinder and CasFinder model databases.

Download the eggNOG database for functional annotation.

Download and configure the GTDB-Tk reference database.

Download the MIDAS reference database.

Download bacterial genomes from NCBI's RefSeq database.

Download the nohuman database for human read removal.

Initialize human read removal database for SRA Human Scrubber.

Search protein query sequences against nucleotide database.

Translate nucleotide query sequences and search nucleotide database.