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11 docs tagged with "fasta"

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abricate_run

Mass screening of contigs for antimicrobial and virulence genes.

abritamr_run

Detect antimicrobial resistance and virulence genes.

agrvate

Determine the agr locus type and operon variants in Staphylococcus aureus.

amrfinderplus_run

Identify antimicrobial resistance and virulence genes in gene or protein sequences.

blast_blastn

Search a nucleotide database using a nucleotide query.

blast_blastp

Search a protein database using a protein query.

blast_blastx

Search a protein database using a translated nucleotide query.

blast_tblastn

Search a translated nucleotide database using a protein query.

blast_tblastx

Search a translated nucleotide database using a translated nucleotide query.

blastn

Search a nucleotide database using nucleotide query sequences.