8 docs tagged with "snp"

Detect recombination and construct a recombination-free phylogeny.

Detect and filter recombination regions in bacterial alignments.

Core-SNP alignment from Snippy outputs.

Generate core-genome SNP alignment from per-sample Snippy outputs.

Rapid haploid variant calling and core genome alignment.

Call variants against a reference genome using Snippy.

Create a SNP distance matrix from a multiple sequence alignment.

Calculate pairwise SNP distances from sequence alignments.